Posts by markpearson

  • CONQUEST boot automatically start on Ubuntu

    Hi,

    Have a look in linuxmanual.pdf for an example startup script but note that you will need to install the package authbind.
    start/stop scripts need to be copied to /etc/init.d and once you are sure it works can be set to automatically start with

    Code
    sudo upadte-rc.d conquest-pacs.sh defaults

    (assuming conquest-pacs.sh is the name of the script). This will create the proper links in the various rcx.d directories.

    Mark

  • Lua forward kills system with NULL database

    Hi,

    Gdb appears to show empty storage. Let me know if you want more information.

  • Lua forward kills system with NULL database

    Hello everyone,

    I use lua on a system running linux to modify images before they are sent to another server. This works OK when there is local database but causes a segmentation fault when the database uses the NULL driver. The relevent section from dicom.ini is

    Code
    [lua]ImportConverter0      =  script('forward to TRAEKIPG;');

    The log looks like this:

    Code
    DGATE (1.4.16e, build Tue Sep 20 14:14:07 2011, bits 64) is running as threaded serverDatabase type: NULL driver (black hole)UPACS THREAD 0: STARTED AT: Tue Sep 20 14:49:40 2011A-ASSOCIATE-RQ Packet Dump        Calling Application Title : "CLOSEDPACS      "        Called Application Title : "BACKUPFWD       "        Application Context : "1.2.840.10008.3.1.1.1", PDU length: 16384        Number of Proposed Presentation Contexts: 2        Presentation Context 0 "1.2.840.10008.5.1.4.1.1.20" 1        Presentation Context 1 "1.2.840.10008.5.1.4.1.1.7" 1Server Command   := 0001Message ID       := 5dddMove Originator Message ID := 0006Move Originator AE         := CLOSEDPACS      ImportConverter-1.0: forwarded object to TRAEKIPGSegmentation fault

    Using strace adds a little more information:

    Code
    ImportConverter-1.0: forwarded object to TRAEKIPG
 <unfinished ...>
+++ killed by SIGSEGV +++
Segmentation fault

    If I use the standard importconverter described in DICOM Routing without database everything works OK. I suspect lua does not know where to read the file from when there is no database.

    Mark

  • Processing files from incoming

    Hi,
    On my linux system, when images are read from the incoming directory they are not processed by import/export or lua. The image is stored correctly and the log file shows that the file has bee added. This means I cannot manipulate images by placing files in the incoming directory.
    Is this the expected behaviour?

  • release candidate 4 of the server version 1.4.16 + rc6-patch

    Hi,

    I found a bug that seems to have been introduced between beta and rc2. findscu from the dicom toolkit (dcmtk) will cause dgate to crash in both windows and linux with rc2 and newer but not beta or older. Logging from the 2 versions look like this.

    Code
    [CONQUESTSRV1] UPACS THREAD 0: STARTED AT: Fri Mar 25 10:12:58 2011[CONQUESTSRV1] A-ASSOCIATE-RQ Packet Dump[CONQUESTSRV1]  Calling Application Title : "FINDSCU         "[CONQUESTSRV1]  Called Application Title : "ANY-SCP         "[CONQUESTSRV1]  Application Context : "1.2.840.10008.3.1.1.1", PDU length: 16384[CONQUESTSRV1]  Number of Proposed Presentation Contexts: 1[CONQUESTSRV1]  Presentation Context 0 "1.2.840.10008.5.1.4.31" 1[CONQUESTSRV1] Server Command   := 0020[CONQUESTSRV1] Message ID       := 0001[CONQUESTSRV1] 0000,0002     22 UI AffectedSOPClassUID    "1.2.840.10008.5.1.4.31" [CONQUESTSRV1] 0000,0100      2 US CommandField           32 [CONQUESTSRV1] 0000,0110      2 US MessageID              1 [CONQUESTSRV1] 0000,0700      2 US Priority               2 [CONQUESTSRV1] 0000,0800      2 US DataSetType            1 [CONQUESTSRV1] 0002,0010     17 UI TransferSyntaxUID      "1.2.840.10008.1.2" [CONQUESTSRV1] (ModalityWorkListQuery) search level: [CONQUESTSRV1] 0002,0010     17 UI TransferSyntaxUID      "1.2.840.10008.1.2" [CONQUESTSRV1] 0010,0010      0 PN PatientName            (empty)[CONQUESTSRV1] 0010,0020      0 LO PatientID              (empty)[CONQUESTSRV1] Query On Modality WorkList[CONQUESTSRV1] Failed on VR Search: 0002 0010[CONQUESTSRV1] (testing phase) - ignored[CONQUESTSRV1] Issue Query on Columns: DICOMWorkList.PatientNam, DICOMWorkList.PatientID[CONQUESTSRV1] Values: [CONQUESTSRV1] Tables: DICOMWorkList[CONQUESTSRV1] Sorting (DICOMWorkList.PatientNam) DoSort := 1[CONQUESTSRV1] Query Distinct Tables: DICOMWorkList[CONQUESTSRV1] Columns              : DICOMWorkList.PatientNam, DICOMWorkList.PatientID[CONQUESTSRV1] Where                : (null)[CONQUESTSRV1] Order                : DICOMWorkList.PatientNam[CONQUESTSRV1] Records = 0[CONQUESTSRV1] C-Find (Modality Work List) located 0 records[CONQUESTSRV1] UPACS THREAD 0: ENDED AT: Fri Mar 25 10:12:58 2011[CONQUESTSRV1] UPACS THREAD 0: TOTAL RUNNING TIME: 0 SECONDS[CONQUESTSRV1] UPACS THREAD 0: STARTED AT: Fri Mar 25 10:09:53 2011[CONQUESTSRV1] A-ASSOCIATE-RQ Packet Dump[CONQUESTSRV1]  Calling Application Title : "FINDSCU         "[CONQUESTSRV1]  Called Application Title : "ANY-SCP         "[CONQUESTSRV1]  Application Context : "1.2.840.10008.3.1.1.1", PDU length: 16384[CONQUESTSRV1]  Number of Proposed Presentation Contexts: 1[CONQUESTSRV1]  Presentation Context 0 "1.2.840.10008.5.1.4.31" 1[CONQUESTSRV1] Server Command   := 0020[CONQUESTSRV1] Message ID       := 0001[CONQUESTSRV1] 0000,0002     22 UI AffectedSOPClassUID    "1.2.840.10008.5.1.4.31" [CONQUESTSRV1] 0000,0100      2 US CommandField           32 [CONQUESTSRV1] 0000,0110      2 US MessageID              1 [CONQUESTSRV1] 0000,0700      2 US Priority               2 [CONQUESTSRV1] 0000,0800      2 US DataSetType            1 [CONQUESTSRV1] 0002,0010     17 UI TransferSyntaxUID      "1.2.840.10008.1.2"

    The command line used in both cases was

    Code
    C:\Temp\dcmtk>bin\findscu --key 0010,0010 --key 0010,0020 127.0.0.1 5678


    cfind from osirix does not cause a crash.

  • release candidate 4 of the server version 1.4.16 + rc6-patch

    Hi,

    I get a segfault on my Ubuntu linux box when I try to add jpeg encoded files created by gdcmimg (http://sourceforge.net/apps/mediawiki/gdcm).

  • LUA binding - documentation

    This simple script changes the StudyUID of an image when it has previously been refused. The image is sent to Aetitle PAXFIX so that it doesn't get triggered by a normal cmove.
    The error looks like this:
    Thu Mar 10 16:04:20 2011 ***Refused to enter inconsistent link StudyInsta into DICOMSeries: PatientID = '747854' SeriesInst = '1.3.46.670589.28.1.1.2096751459.1259802365.2147483647' AND SeriesPat = '747854', Old='1.2.840.113704.1.111.2388.1259800462.6', Refused='1.3.46.670589.28.1.2.0.21.96.163.65.94.20091203112921.31.2'

    The code:

    Code
    [lua]
ImportConverter0 = if Association.Called == "PACSFIX" then Data.StudyInstanceUID = dbquery('DICOMSeries', 'StudyInsta', 'SeriesInst = "'..Data.SeriesInstanceUID..'"')[1][1]; end;

  • Saving rejected images

    Hi,

    Every week I have 1-2 images that the database refuses to enter. The files are dropped and an error is logged. At the moment I search the PacsTrouble log for these errors so that I can manually fix the files and resend them. As a temporary measure I have created a PacsReject log file to separate the errors from the hundreds of warning messages in PacsTrouble. My PacsReject log has entries like this:

    Code
    Thu Mar 10 16:04:20 2011 ***Refused to enter inconsistent link StudyInsta into DICOMSeries: PatientID = '747854' SeriesInst = '1.3.46.670589.28.1.1.2096751459.1259802365.2147483647' AND SeriesPat = '747854', Old='1.2.840.113704.1.111.2388.1259800462.6', Refused='1.3.46.670589.28.1.2.0.21.96.163.65.94.20091203112921.31.2'
Thu Mar 10 16:05:23 2011 ***Refused to enter inconsistent link StudyInsta into DICOMSeries: PatientID = '961818' SeriesInst = '1.3.46.670589.28.1.1.2096751459.1261535959.2147483647' AND SeriesPat = '961818', Old='1.2.840.113704.1.111.2748.1261534634.7', Refused='1.3.46.670589.28.1.2.0.21.96.163.65.94.20091223130205.15.2'
Thu Mar 10 16:05:35 2011 ***Refused to enter inconsistent link StudyInsta into DICOMSeries: PatientID = '1096924' SeriesInst = '1.3.46.670589.28.1.1.2198218821.1264216906.732813136585' AND SeriesPat = '1096924', Old='1.3.46.670589.28.1.2.0.21.96.163.65.94.20091223144222.84.2', Refused='1.3.46.670589.28.1.1.2198218821.732813136585'
Thu Mar 10 16:05:35 2011 ***Refused to enter inconsistent link StudyInsta into DICOMSeries: PatientID = '1096924' SeriesInst = '1.3.46.670589.28.1.1.2198218821.1264216906.732813136585' AND SeriesPat = '1096924', Old='1.3.46.670589.28.1.2.0.21.96.163.65.94.20091223144222.84.2', Refused='1.3.46.670589.28.1.1.2198218821.732813136585'

    My question is, would it be possible to have a rejected images directory to save these files. If the files were all in one place it would save a lot of time when fixing them.

  • Jasper compile error

    Hello,
    I had the following errors while compiling jasper and worked out how to fix it.

    Code
    jpg_dec.c: In function 'jpg_put_pixel_rows':
jpg_dec.c:312: error: 'JSAMPLE16' undeclared (first use in this function)
jpg_dec.c:312: error: (Each undeclared identifier is reported only once
jpg_dec.c:312: error: for each function it appears in.)
jpg_dec.c:312: error: 'bufptr16' undeclared (first use in this function)
jpg_dec.c:329: error: 'JSAMPROW16' undeclared (first use in this function)

    I had already done in jpeg-6c:
    sudo make install
    but also had to add
    sudo make install-lib

    I don't know why the first install did not also install the libraries.

  • Segmentation fault after regendir

    I have found that --deleteseries causes a segfault with mysql but not dbase that might be a related problem. I am not explicitly running gdb but the output is quite informative.

    I also tried it on a series containing only 1 image with similar results.

  • DHCP Clients

    There are a number of factors which will the ease of use of this approach. Basically, if the ip address changes then acrnema.map must be edited.
    If you have control of the dhcp server you can assign the ip based on the MAC address. This is the same principle as fixed ip but more flexible for the client.
    If the pool of available addresses is larger than the number of clients they should get the same address they had from the first connection.
    If the pool is smaller than the number of clients then there is a greater chance of getting a new ip. This is affected by how often the client is disconnected from the network.

  • Linux hardware - NAS combination

    If you want to be a bit more adventurous, most of the NAS devices use variations on the ARM chips and run conquest/mysql quite well.

    I have just replaced a NSLU2 http://en.wikipedia.org/wiki/NSLU2 with an external usb HDD that ran for about 2 years with a DNS323 http://wiki.dns323.info/ with 2 internal SATA drives. Both systems can use the debian-arm distribution which means you can install the gcc compiler, mysql, postgresql, apache etc although it is more of a challenge for the DNS323 which requires a special cable for serial port access.

    Compiling dgate on the NSLU2 took more than 30 minutes compared to under 1 minute for my desktop so I first thought performance might be unacceptably slow but I was surprised that the transfer speeds were quite reasonable. The DNS323 has twice the memory (64MB) and runs even better.

    I can post more details if anyone is interested.